Author

J. K. Sakkos

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioengineering· 1

Signature Assays, Organisms & Methods

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Research Focus:clustering· 2 Organism:bacteria (other)· 1 Organism:C. elegans· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

D. C. Ducat· 3 shared M. Fuentes-Cabrera· 2 shared M. Santos-Merino· 2 shared A. K. Singh· 1 shared B. J. Walker· 1 shared B. Li· 1 shared E. J. Kokarakis· 1 shared M. Ziatdinov· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 22 mutual co-author links

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3 shared papersMicrobiology

D. C. Ducat

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Predicting partner fitness based on spatial structuring in a light-driven microbial community

J. K. Sakkos, M. Santos-Merino, E. J. Kokarakis, B. Li, M. Fuentes-Cabrera, P. Zuliani, D. C. Ducat

The paper develops an in-silico model of a synthetic microbial consortium to predict colony fitness based on spatial structuring and metabolic exchange.

bioRxiv · Sep 28, 2022Bioengineering

Investigating Carboxysome Morphology Dynamics with a Rotationally Invariant Variational Autoencoder

M. Fuentes-Cabrera, J. K. Sakkos, D. C. Ducat, M. Ziatdinov

This study uses a rotationally invariant variational autoencoder to analyze carboxysome morphology dynamics in cyanobacteria, finding it can quantify changes in location, shape, and size over time.

bioRxiv · Nov 15, 2021Microbiology

Multi-layer Regulation of Rubisco in Response to Altered Carbon Status in Synechococcus elongatus PCC 7942

A. K. Singh, M. Santos-Merino, J. K. Sakkos, B. J. Walker, D. C. Ducat

The paper investigates how Rubisco activity and organization respond to changes in carbon availability in Synechococcus elongatus PCC 7942, revealing their role in metabolic balancing.

bioRxiv · Oct 11, 2021 · PreprintMicrobiology