Author

P.-A. Chaumeil

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Organism:bacteria (other)· 2 Research Focus:phylogenetics / evolution· 2 Research Focus:database / resource· 1 Organism:virus· 1

Frequent Co-Authors

C. Rinke· 3 shared D. H. Parks· 3 shared M. Chuvochina· 3 shared P. Hugenholtz· 3 shared A. J. Mussig· 2 shared D. W. Waite· 2 shared A. Skarshewski· 1 shared W. B. Whitman· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 26 mutual co-author links

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3 shared papersMicrobiology

C. Rinke

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Author profile →

3 papers

Recent·Most cited

A rank-normalized archaeal taxonomy based on genome phylogeny resolves widespread incomplete and uneven classifications

C. Rinke, M. Chuvochina, A. J. Mussig, P.-A. Chaumeil, D. W. Waite, W. B. Whitman, D. H. Parks, P. Hugenholtz

This paper introduces a rank-normalized archaeal taxonomy based on genome phylogeny, resolving classification issues in 93.3% of archaeal genomes.

Nature Microbiology · Jun 21, 2021Peer-reviewedMicrobiology

Selection of representative genomes for 24,706 bacterial and archaeal species clusters provide a complete genome-based taxonomy

D. H. Parks, M. Chuvochina, P.-A. Chaumeil, C. Rinke, A. J. Mussig, P. Hugenholtz

The paper introduces 24,706 species clusters for bacterial and archaeal genomes to create a complete genome-based taxonomy using ANI criteria and placeholder names for uncultivated species.

bioRxiv · Nov 4, 2019Microbiology

A proposal for a standardized bacterial taxonomy based on genome phylogeny

D. H. Parks, M. Chuvochina, D. W. Waite, C. Rinke, A. Skarshewski, P.-A. Chaumeil, P. Hugenholtz

The paper proposes a standardized bacterial taxonomy based on genome phylogeny, identifying 99 phyla and making significant taxonomic changes across 73% of taxa.

bioRxiv · Jan 31, 2018Microbiology