Author

M. Chuvochina

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 5

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 5 Assay:whole-genome sequencing· 4 Organism:bacteria (other)· 3 Research Focus:phylogenetics / evolution· 3 Research Focus:database / resource· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Assay:metagenomics· 1

Frequent Co-Authors

D. H. Parks· 4 shared P. Hugenholtz· 4 shared C. Rinke· 3 shared P.-A. Chaumeil· 3 shared A. J. Mussig· 2 shared D. W. Waite· 2 shared A. Chakraborty· 1 shared A. Skarshewski· 1 shared

Activity by Year

2018-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 23 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

4 shared papersMicrobiology

D. H. Parks

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Reclassification of Shigella species as later heterotypic synonyms of Escherichia coli in the Genome Taxonomy Database

D. H. Parks, M. Chuvochina, P. R. Reeves, S. A. Beatson, P. Hugenholtz

The paper reclassifies Shigella species as synonyms of Escherichia coli based on genomic data and resolves classification conflicts in the GTDB.

bioRxiv · Sep 22, 2021 · PreprintMicrobiology

A rank-normalized archaeal taxonomy based on genome phylogeny resolves widespread incomplete and uneven classifications

C. Rinke, M. Chuvochina, A. J. Mussig, P.-A. Chaumeil, D. W. Waite, W. B. Whitman, D. H. Parks, P. Hugenholtz

This paper introduces a rank-normalized archaeal taxonomy based on genome phylogeny, resolving classification issues in 93.3% of archaeal genomes.

Nature Microbiology · Jun 21, 2021Peer-reviewedMicrobiology

Selection of representative genomes for 24,706 bacterial and archaeal species clusters provide a complete genome-based taxonomy

D. H. Parks, M. Chuvochina, P.-A. Chaumeil, C. Rinke, A. J. Mussig, P. Hugenholtz

The paper introduces 24,706 species clusters for bacterial and archaeal genomes to create a complete genome-based taxonomy using ANI criteria and placeholder names for uncultivated species.

bioRxiv · Nov 4, 2019Microbiology

Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments

X. DONG, C. Greening, J. E. Rattray, A. Chakraborty, M. Chuvochina, D. Mayumi, J. Dolfing, C. Li, J. M. Brooks, B. B. Bernard, R. A. Groves, I. A. Lewis, C. R. J. Hubert

This study investigates microbial energy and carbon acquisition strategies in deep-sea petroleum seeps using metagenomic analysis and geochemical data.

bioRxiv · Jan 28, 2019Microbiology

A proposal for a standardized bacterial taxonomy based on genome phylogeny

D. H. Parks, M. Chuvochina, D. W. Waite, C. Rinke, A. Skarshewski, P.-A. Chaumeil, P. Hugenholtz

The paper proposes a standardized bacterial taxonomy based on genome phylogeny, identifying 99 phyla and making significant taxonomic changes across 73% of taxa.

bioRxiv · Jan 31, 2018Microbiology