Author

Partha Mitra

Cold Spring Harbor Laboratory

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 3

Signature Assays, Organisms & Methods

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Assay:imaging· 3 Research Focus:cell type annotation· 2 Organism:mouse· 2 Approach:statistical model· 2 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1

Frequent Co-Authors

Alexander Tolpygo· 1 shared Jaikishan JayakumariD· 1 shared Janani Ramaswamy· 1 shared Keerthi RamiD· 1 shared Margaret Henderson· 1 shared Pascal Grange· 1 shared Samik BanerjeeiD· 1 shared Stephen Savoia· 1 shared

Activity by Year

2014-2019 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperNeuroscience

Alexander Tolpygo

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Author profile →

3 papers

Recent·Most cited

High precision automated detection of labeled nuclei in Gigapixel resolution image data of Mouse Brain

Sukhendu Das, Jaikishan Jayakumar, Samik Banerjee, Janani Ramaswamy, Venu Vangala, Keerthi Ram, Partha Mitra

This paper presents an unsupervised algorithm for detecting labeled nuclei in whole mouse brain images, achieving performance close to human accuracy.

bioRxiv · Mar 25, 2019 · PreprintNeuroscience

Topological Skeletonization and Tree-Summarization of Neurons Using Discrete Morse Theory

Suyi Wang, Xu Li, Partha Mitra, Yusu Wang

The paper introduces a method using Discrete Morse Theory to extract and summarize neuronal tree structures from volumetric brain images, providing a more informative summary than traditional connectivity matrices.

bioRxiv · May 13, 2018 · PreprintNeuroscience

Automated placement of stereotactic injections using a laser scan of the skull

Margaret Henderson, Vadim Pinskiy, Alexander Tolpygo, Stephen Savoia, Pascal Grange, Partha Mitra

This paper introduces a software tool that uses 3D laser scans of mouse skulls to automate stereotactic injection targeting with sub-millimeter precision.

bioRxiv · Oct 22, 2014 · PreprintNeuroscience