Author

Paul SchĂ¤Pe

Technische Universität Berlin

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Organism:fungi (other)· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2

Frequent Co-Authors

Sascha JungiD· 2 shared Vera MeyeriD· 2 shared B Baumann· 1 shared Benjamin M. NitscheiD· 1 shared Björn GutschmanniD· 1 shared Evelina Y. BasenkoiD· 1 shared MJ Kwon· 1 shared Norman PaegeiD· 1 shared

Activity by Year

2018-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersGenomics

Sascha JungORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintJul 28, 2023

High-quality co-expression networks for accurate gene function predictions in the fungal cell factory Aspergillus niger and beyond

Paul SchĂ¤Pe, Stephan Starke, Tabea Schuetze…·Vera Meyer

The paper constructs a high-quality co-expression network for Aspergillus niger using RNA-seq data, showing improved gene function prediction compared to a previous microarray-based network.

4 citations

fungi (other)bulk RNA-seq

𝕏 PostBluesky

Systems BiologyNucleic Acids ResearchPeer-reviewedNov 27, 2018

Updating genome annotation for the microbial cell factory Aspergillus niger using gene co-expression networks

Paul SchĂ¤Pe, MJ Kwon, B Baumann…·Vera Meyer

This study uses gene co-expression networks to infer functions for uncharacterized genes in Aspergillus niger, identifying four transcription factors involved in secondary metabolite synthesis.

74 citations

fungi (other)bulk RNA-seq

𝕏 PostBluesky