Author

Pavel Afonine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Assay:structural biology· 2 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Alexandre Urzhumtsev· 2 shared James Fraser· 2 shared Andrew H Van Benschoten· 1 shared Andrew Van Benschoten· 1 shared Colin Jackson· 1 shared Michael Wall· 1 shared Nicholas Sauter· 1 shared Paul Adams· 1 shared

Activity by Year

2015-2015 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersBiophysics

Alexandre Urzhumtsev

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2 papers

Recent·Most cited

From deep TLS validation to ensembles of atomic models built from elemental motions

Alexandre Urzhumtsev, Pavel Afonine, Andrew H Van Benschoten, James Fraser, Paul D Adams

The paper introduces a framework to validate TLS matrices in X-ray refinement and generate structural ensembles consistent with these parameters.

bioRxiv · Jan 2, 2015Biophysics

Predicting X-ray Diffuse Scattering from Translation Libration Screw Structural Ensembles

Andrew Van Benschoten, Pavel Afonine, Thomas Terwilliger, Michael Wall, Colin Jackson, Nicholas Sauter, Paul Adams, Alexandre Urzhumtsev, James Fraser

The paper introduces phenix.diffuse, a tool that calculates X-ray diffuse scattering from structural ensembles, demonstrating its application to TLS refinement in glycerophosphodiesterase GpdQ.

bioRxiv · Jan 2, 2015Biophysics