Author

Paul D Adams

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2

Signature Assays, Organisms & Methods

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Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:cryo-EM· 1 Approach:deep learning· 1 Assay:structural biology· 1

Frequent Co-Authors

Alexandre Urzhumtsev· 1 shared Andrew H Van Benschoten· 1 shared Benjamin A Barad· 1 shared Frank DiMaio· 1 shared James Fraser· 1 shared James S Fraser· 1 shared Nathaniel Echols· 1 shared Pavel Afonine· 1 shared

Activity by Year

2015-2015 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBiophysics

Alexandre Urzhumtsev

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2 papers

Recent·Most cited

Side-chain-directed model and map validation for 3D Electron Cryomicroscopy

Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser

This paper introduces EMRinger, a method to validate atomic models against cryo-EM maps by analyzing side-chain dihedral angles, showing its utility in model refinement and radiation damage assessment.

bioRxiv · Feb 3, 2015Biophysics

From deep TLS validation to ensembles of atomic models built from elemental motions

Alexandre Urzhumtsev, Pavel Afonine, Andrew H Van Benschoten, James Fraser, Paul D Adams

The paper introduces a framework to validate TLS matrices in X-ray refinement and generate structural ensembles consistent with these parameters.

bioRxiv · Jan 2, 2015Biophysics