Author

Phil Xie

University of California, Berkeley

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Arjun Chandran· 1 shared Cassandra Areff· 1 shared Daphne YangiD· 1 shared Daven LimiD· 1 shared Eshaan Mistry· 1 shared Guru RajeshiD· 1 shared Ivan Kristanto· 1 shared J. Christopher AndersoniD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Arjun Chandran

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1 paper

Recent·Most cited

Interpreting biochemical text with language models:a machine learning framework for reaction extraction and cheminformatic validation

Daven Lim, Swathi Badrinarayanan, Kira Sterling, Guru Rajesh, Eshaan Mistry, Daphne Yang, Max Lee, Kenneth Bryan Hsu, Mrunali Manjrekar, Cassandra Areff, Phil Xie, Ivan Kristanto, Arjun Chandran, J. Christopher Anderson

This paper presents a framework using LLMs and cheminformatics to extract and validate enzymatic reactions from scientific text, showing accurate inference of incomplete reactions.

bioRxiv · May 15, 2025 · PreprintBioinformatics