Author

Ivan Kristanto

University of California, Berkeley

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:CRISPR screen· 1 Approach:machine learning (classical)· 1 Organism:mouse· 1 Research Focus:phylogenetics / evolution· 1 Approach:statistical model· 1

Frequent Co-Authors

Arjun Chandran· 1 shared Cassandra Areff· 1 shared Daphne YangiD· 1 shared Daven LimiD· 1 shared Eshaan Mistry· 1 shared Guru RajeshiD· 1 shared J. Christopher AndersoniD· 1 shared Kenneth Bryan HsuiD· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Arjun Chandran

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2 papers

Recent·Most cited

Interpreting biochemical text with language models:a machine learning framework for reaction extraction and cheminformatic validation

Daven Lim, Swathi Badrinarayanan, Kira Sterling, Guru Rajesh, Eshaan Mistry, Daphne Yang, Max Lee, Kenneth Bryan Hsu, Mrunali Manjrekar, Cassandra Areff, Phil Xie, Ivan Kristanto, Arjun Chandran, J. Christopher Anderson

This paper presents a framework using LLMs and cheminformatics to extract and validate enzymatic reactions from scientific text, showing accurate inference of incomplete reactions.

bioRxiv · May 15, 2025 · PreprintBioinformatics

Tree reconstruction guarantees from CRISPR-Cas9 lineage tracing data using Neighbor-Joining

Sebastian Prillo, Kevin An, Wilson Wu, Ivan Kristanto, Matthew G. Jones, Yun S. Song, Nir Yosef

This paper develops a Neighbor-Joining algorithm with theoretical guarantees for reconstructing phylogenies from CRISPR-Cas9 lineage tracing data, showing improved performance on simulated and real data.

bioRxiv · Aug 27, 2024 · PreprintBioinformatics