Evaluating Aggregated Gene Level eQTL Scores
Douglas Meyer, Noa Popko, David Laub, Phillip Schofield, Tiffany Amariuta, Ludmil B. Alexandrov, Hannah K. Carter
The paper evaluates how different model architectures, LD filtering thresholds, and variant prioritization methods affect gene-level eQTL score prediction quality using over 3 million models.
bioRxiv · Aug 28, 2026 · PreprintBioinformatics