Author

R. T. McDonnell

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Biophysics· 2 Biochemistry· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:deep learning· 3 Approach:statistical model· 3 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Organism:E. coli· 1 Research Focus:protein folding & dynamics· 1 Assay:proteomics· 1

Frequent Co-Authors

A. H. Elcock· 3 shared A. N. Henderson· 1 shared N. Patel· 1 shared Z. J. Wehrspan· 1 shared

Activity by Year

2023-2023 · peak 3/yr

Co-Author Collaboration Network

4 top collaborators · 4 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBiophysics

A. H. Elcock

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

AutoRNC: an automated modeling program for building atomic models of ribosome-nascent chain complexes

R. T. McDonnell, A. H. Elcock

AutoRNC generates atomic models of ribosome-nascent chain complexes by sampling dipeptide conformations from RCSB, matching experimental data and enabling hypothesis generation for protein folding studies.

bioRxiv · Jun 14, 2023Biophysics

Modeling the 3D structure and conformational dynamics of very large RNAs using coarse-grained molecular simulations

A. N. Henderson, R. T. McDonnell, A. H. Elcock

This paper introduces a computational method to model and simulate the 3D structure and dynamics of large RNAs using coarse-grained molecular simulations and validates its accuracy against experimental data.

bioRxiv · Jun 6, 2023 · PreprintBiophysics

Atomic Models of All Major Trans-Envelope Complexes Involved in Lipid Trafficking in Escherichia Coli Constructed Using a Combination of AlphaFold2, AF2Complex, and Membrane Morphing Simulations

R. T. McDonnell, N. Patel, Z. J. Wehrspan, A. H. Elcock

The paper constructs atomic models of four lipid transport TECs in E. coli using AlphaFold2, AF2Complex, and membrane morphing simulations.

bioRxiv · Apr 28, 2023 · PreprintBiochemistry