Author

Renke Pan

Sentieon (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:machine learning (classical)· 2 Research Focus:variant calling· 2 Assay:whole-exome sequencing· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Donald N. FreediD· 2 shared Rafael AldanaiD· 2 shared Haodong CheniD· 1 shared Jinnan HuiD· 1 shared Zhipan LiiD· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Donald N. FreedORCID

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2 papers

Recent·Most cited

DNAscope: High accuracy small variant calling using machine learning

Donald N. Freed, Renke Pan, Haodong Chen, Zhipan Li, Jinnan Hu, Rafael Aldana

DNAscope improves small variant calling accuracy and reduces computational cost compared to DNAseq using a machine-learned genotyping model.

bioRxiv · May 20, 2022 · PreprintBioinformatics

TNscope: Accurate Detection of Somatic Mutations with Haplotype-based Variant Candidate Detection and Machine Learning Filtering

Donald N. Freed, Renke Pan, Rafael Aldana

A haplotype-based somatic variant caller paired with a machine learning filter, reported as more accurate than other callers on in-silico mixtures of GIAB reference samples.

bioRxiv · Jan 19, 2018 · PreprintBioinformatics