Author

Sadie Giddings

University of California San Diego

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 3

Signature Assays, Organisms & Methods

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Research Focus:drug response / drug discovery· 3 Assay:metabolomics· 3 Approach:deep learning· 2 Organism:mouse· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Abubaker PataniD· 3 shared Adrián JinichiD· 3 shared Andrés Mauricio Caraballo‐RodrígueziD· 3 shared Haoqi Nina ZhaoiD· 3 shared Harsha GoudaiD· 3 shared Ipsita MohantyiD· 3 shared Jasmine ZemliniD· 3 shared Julius AgongoiD· 3 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersBiochemistry

Abubaker PatanORCID

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Author profile →

3 papers

Recent·Most cited

Alkamines reveal a hidden layer of steroid and drug metabolism

Julius Agongo, Subshaskar R Panga, Shipei Xing, Vincent Charron‐Lamoureux, Harsha Gouda, Yasin El Abiead, Megan R. Nelson, Abubaker Patan, Marvic Carrillo Terrazas, Kine Eide Kvitne, Jeong In Seo, Prajit Rajkumar, Sadie Giddings, Helena Mannochio-Russo, Jasmine Zemlin, , Pieter C. Dorrestein

The paper identifies alkamines as a previously hidden class of metabolites formed via reductive amination, revealing significant gaps in metabolomics and drug metabolism understanding.

bioRxiv · May 15, 2026 · PreprintBiochemistry

A searchable metadata network graph for microbiome metabolomics

Vincent Charron‐Lamoureux, Shipei Xing, Abubaker Patan, Corinn Walker, Ricardo Almada‐Monter, Yasin El Abiead, Haoqi Nina Zhao, Lucas Patel, Yuhan Weng, Antonio Gonzalez, Gail L. Ackermann, Victoria Deleray, V. Kalai Gandhi, Ipsita Mohanty, Andrés Mauricio Caraballo‐Rodríguez, , Pieter C. Dorrestein

The paper introduces microbiomeMASST, a metadata network graph linking metabolites across datasets, enabling cross-study analysis of microbial metabolites and their biological context.

bioRxiv · Feb 5, 2026 · PreprintBiochemistry

Charting the undiscovered metabolome with synthetic multiplexing implicates ibuprofen-carnitine in myotoxicity

Abubaker Patan, Shipei Xing, Vincent Charron‐Lamoureux, Zhewen Hu, Victoria Deleray, Julius Agongo, Jasmine Zemlin, Harsha Gouda, Prajit Rajkumar, Yasin El Abiead, Aubreyana E. McMaugh, Hannah Heath, Helena Mannochio-Russo, Ipsita Mohanty, Laila Abolfathi, , Pieter C. Dorrestein

The paper uses synthetic multiplexing to annotate uncharacterized metabolites, identifying ibuprofen-carnitine as a metabolite linked to muscle toxicity.

bioRxiv · Nov 18, 2025 · PreprintBiochemistry