Author

Saketh Baddam

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:DNA methylation· 1 Organism:E. coli· 1 Research Focus:sequence-to-function modeling· 1 Approach:transformer / foundation model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Abdelrahman ElfikkyiD· 1 shared Francesco CavarrettaiD· 1 shared George Luka· 1 shared Ibrahim FaragiD· 1 shared Omar EmamiD· 1 shared Yasser M. SanadiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Abdelrahman ElfikkyORCID

Mutual co-authors in cluster

Author profile →

1 paper

Recent·Most cited

ColiFormer: A Transformer-Based Codon Optimization Model Balancing Multiple Objectives for Enhanced E. coli Gene Expression

Saketh Baddam, Omar Emam, Abdelrahman Elfikky, Francesco Cavarretta, George Luka, Ibrahim Farag, Yasser M. Sanad

ColiFormer improves E. coli gene expression by balancing multiple codon optimization objectives using a transformer model, outperforming existing methods in CAI, tAI, and cis-regulatory element reduction.

Bioengineering · Jan 19, 2026Peer-reviewedBioinformatics