Author

Shane Menzies

University of Washington Tacoma

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

A B Wicks· 1 shared Antti HonkelaiD· 1 shared Daniil FilienkoiD· 1 shared Hakime ÖztürkiD· 1 shared Jineta BanerjeeiD· 1 shared Joonas Jälkö· 1 shared Jules KreueriD· 1 shared Julio Sáez-RodrígueziD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

A B Wicks

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1 paper

Recent·Most cited

Towards Useful and Private Synthetic Omics: Community Benchmarking of Generative Models for Transcriptomics Data

Hakime Öztürk, Tejumade Afonja, Joonas Jälkö, Rūta Binkytė, Pablo Rodríguez-Mier, Sebastian Lobentanzer, A B Wicks, Jules Kreuer, Sofiane Ouaari, Nico Pfeifer, Shane Menzies, Sikha Pentyala, Daniil Filienko, Steven Golob, P.S. McKeever, , Antti Honkela

The paper benchmarks generative models for synthetic bulk RNA-seq data, finding trade-offs between utility, biological preservation, and privacy risks across different methods.

bioRxiv · Mar 4, 2026 · PreprintBioinformatics