Vorpal: A Novel RNA Virus Feature-Extraction Algorithm Demonstrated Through Interpretable Genotype-to-Phenotype Linear Models
Phillip Davis, John Bagnoli, David A. Yarmosh, Alan Shteyman, Lance Presser, Sharon Altmann, Shelton S. Bradrick, Joseph A. Russell
Vorpal constructs interpretable linear models using clustered degenerate K-mers to predict binary phenotypes in RNA viruses, demonstrating its utility in three virus clades.
bioRxiv · Feb 28, 2020 · PreprintBioinformatics