Author

Shiqi Yu

University of British Columbia

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 1 Molecular Biology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:metabolomics· 1 Assay:metagenomics· 1

Frequent Co-Authors

Artem KushneriD· 2 shared Khanh Dao DuciD· 2 shared Simcha SrebnikiD· 2 shared Dianlei Wang· 1 shared Ella Teasell· 1 shared Juan Liang· 1 shared Nianxia SuniD· 1 shared Rongxin Zou· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBiophysics

Artem KushnerORCID

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Author profile →

3 papers

Recent·Most cited

Multi-omics reveals accumulation mechanisms underlying differences in sesquiterpenoid content across different growth environments of Atractylodes macrocephala rhizome

陈梅莉, Shiqi Yu, Yakun Wang, Yi Zheng, Rongxin Zou, Juan Liang, Wentao ZHU, Wei Fang, Dianlei Wang, Nianxia Sun

This study identifies how different growth environments affect sesquiterpenoid accumulation in Atractylodes macrocephala rhizome through multi-omics analysis of metabolites, genes, and microbiota.

bioRxiv · Oct 13, 2026 · PreprintPlant Biology

Advanced coarse-grained model for fast simulation of nascent polypeptide chain dynamics within the ribosome

Shiqi Yu, Artem Kushner, Ella Teasell, Wenjun Zhao, Simcha Srebnik, Khanh Dao Duc

This paper develops a coarse-grained model for simulating nascent polypeptide dynamics in the ribosome, enabling efficient simulation of elongation and escape processes.

Biophysical Journal · Nov 5, 2025Peer-reviewedBiophysics

Detection of prokaryotic-like ribosome exit tunnels within eukaryotic kingdoms

Shiqi Yu, Artem Kushner, Simcha Srebnik, Khanh Dao Duc

The paper identifies prokaryotic-like ribosome exit tunnels in eukaryotic protists by analyzing structural and sequence data from 725 ribosome models.

bioRxiv · Apr 8, 2025 · PreprintMolecular Biology