Author

Shir Bahiri Elitzur

Tel Aviv University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Synthetic Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Approach:statistical model· 2 Organism:E. coli· 1 Approach:machine learning (classical)· 1 Assay:protein sequence· 1 Research Focus:software / tool· 1 Organism:yeast· 1

Frequent Co-Authors

Tamir TulleriD· 3 shared Alon DiamentiD· 1 shared Boaz Apt· 1 shared Dana Yacobi· 1 shared Etai Shpigel· 1 shared Itay KatziriD· 1 shared Larissa Fine· 1 shared Rachel Cohen-Kupiec· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersSynthetic Biology

Tamir TullerORCID

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Author profile →

3 papers

Recent·Most cited

Design of bacterial DNT sensors based on computational models

Shir Bahiri Elitzur, Etai Shpigel, Itay Katzir, Uri Alon, Shimshon Belkin, Tamir Tuller

This study develops a bacterial biosensor for DNT detection using computational models to guide design, achieving improved sensitivity and specificity.

Nucleic Acids Research · Dec 17, 2025Peer-reviewedSynthetic Biology

Predicting gene sequences with AI to study codon usage patterns

Tomer Sidi, Shir Bahiri Elitzur, Tamir Tuller, Rachel Kolodny

The paper trains AI models to predict codon sequences from amino acid sequences in yeast and bacteria, showing they outperform frequency-based methods and reveal codon usage patterns linked to evolutionary pressures.

Proceedings of the National Academy of Sciences · Dec 31, 2024Peer-reviewedBioinformatics

Prokaryotic rRNA-mRNA interactions are involved in all translation steps and shape bacterial transcripts

Shir Bahiri Elitzur, Rachel Cohen-Kupiec, Dana Yacobi, Larissa Fine, Boaz Apt, Alon Diament, Tamir Tuller

The paper shows rRNA-mRNA interactions influence all translation steps in bacteria and shape transcript evolution through selection pressures on interaction strength.

RNA Biology · Sep 29, 2021Peer-reviewedSystems Biology