Author

Shokoofeh Ghiam

Institute for Research in Fundamental Sciences

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Approach:matrix factorization· 1 Assay:metagenomics· 1 Research Focus:protein design· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Changiz EslahchiiD· 2 shared Asiyeh Mirzaei Koli· 1 shared Mohammad Reza AbdollahiiD· 1 shared Negin Sadat BabaihaiD· 1 shared Rosa AghdamiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Changiz EslahchiORCID

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2 papers

Recent·Most cited

ComplexMatrixComb: Predicting Drug Combination IC50 Doses via Complex Numbers and Matrix Factorization

Mohammad Reza Abdollahi, Asiyeh Mirzaei Koli, Shokoofeh Ghiam, Changiz Eslahchi

ComplexMatrixComb predicts drug combination IC50 doses using complex numbers and matrix factorization, outperforming traditional methods and validating with experimental assays.

bioRxiv · Oct 6, 2025 · PreprintBioinformatics

NN-RNALoc: neural network-based model for prediction of mRNA sub-cellular localization using distance-based sub-sequence profiles

Negin Sadat Babaiha, Rosa Aghdam, Shokoofeh Ghiam, Changiz Eslahchi

NN-RNALoc predicts mRNA sub-cellular localization using distance-based sub-sequence profiles and protein-protein interaction data, achieving higher accuracy and faster computation than existing models.

PLoS ONE · Sep 14, 2023Peer-reviewedBioinformatics