Author

Shuyuan Tang

South China Agricultural University

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Organism:plant (other)· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

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Brandon S. GautiD· 1 shared Chengjie CheniD· 1 shared J. J. EmersoniD· 1 shared Jiahao Chen· 1 shared Jinfeng CheniD· 1 shared Liang Wang· 1 shared Mahul ChakrabortyiD· 1 shared Ming HuiD· 1 shared

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Brandon S. GautORCID

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1 paper

Recent·Most cited

Benchmarking, detection, and genotyping of structural variants in a population of whole-genome assemblies using the SVGAP pipeline

Ming Hu, Penglong Wan, Chengjie Chen, Shuyuan Tang, Jiahao Chen, Liang Wang, Mahul Chakraborty, Yongfeng Zhou, Jinfeng Chen, Brandon S. Gaut, J. J. Emerson, Yi Liao

The paper benchmarks and evaluates SVGAP, a pipeline for structural variant discovery, genotyping, and annotation in whole-genome assemblies, showing its effectiveness in maize genomes.

bioRxiv · Feb 7, 2025 · PreprintBioinformatics