Author

Jinfeng Chen

Chinese Academy of SciencesORCID 0000-0002-5628-6322Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1 Genetics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 4 Research Focus:gene regulatory network inference· 3 Organism:plant (other)· 3 Approach:statistical model· 3 Research Focus:variant calling· 3 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

Yi LiaoiD· 3 shared Brandon S. GautiD· 2 shared J. J. EmersoniD· 2 shared Yongfeng ZhouiD· 2 shared Bihao CaoiD· 1 shared Changming CheniD· 1 shared Changyou LiuiD· 1 shared Chengjie CheniD· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersEvolutionary Biology

Yi LiaoORCID

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4 papers

Recent·Most cited

Evolutionary BiologybioRxivPreprintFeb 24, 2025

Accelerated genome shuffling associated with rapid evolution of sexual conflict in seed beetles

Weiyao Chen, Jinshuai Zhao, Miaojin Lin…·Jinfeng Chen

The paper investigates structural variants in seed beetles, linking them to rapid evolution of sex chromosomes and sex-biased gene expression.

DOI 10.1101/2025.02.24.639998

multiple specieswhole-genome sequencing

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BioinformaticsbioRxivPreprintFeb 7, 2025

Benchmarking, detection, and genotyping of structural variants in a population of whole-genome assemblies using the SVGAP pipeline

Ming Hu, Penglong Wan, Chengjie Chen…·Yi Liao

The paper benchmarks and evaluates SVGAP, a pipeline for structural variant discovery, genotyping, and annotation in whole-genome assemblies, showing its effectiveness in maize genomes.

DOI 10.1101/2025.02.07.637096

plant (other)whole-genome sequencing

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GenomicsNature CommunicationsPeer-reviewedJun 16, 2022

The 3D architecture of the pepper (Capsicum annum) genome and its relationship to function and evolution

Yi Liao, Juntao Wang, Zhangsheng Zhu…·Changming Chen

This study investigates the 3D genome organization of pepper, showing how chromatin structure relates to gene expression and evolution.

92 citationstop 2%

plant (other)Hi-C

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GeneticsProceedings of the National Academy of SciencesPeer-reviewedOct 5, 2020

Genomic diversity generated by a transposable element burst in a rice recombinant inbred population

Jinfeng Chen, Lu Lu, Sofia M. C. Robb…·Susan R. Wessler

This study characterizes a transposable element (TE) burst in rice, showing how mPing elements generate structural genomic variations through insertion, excision, and recombination.

39 citations

plant (other)whole-genome sequencing

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