Author

Siham Amara-Belgadi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:transformer / foundation model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:drug response / drug discovery· 1 Organism:mouse· 1 Research Focus:perturbation response prediction· 1 Organism:rat· 1

Frequent Co-Authors

Ashwin GopinathiD· 2 shared David Yu ZhangiD· 2 shared Orion Li· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersSystems Biology

Ashwin GopinathORCID

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2 papers

Recent·Most cited

Transfer Learning Of Gene Expression Using Reactome

Siham Amara-Belgadi, David Yu Zhang, Ashwin Gopinath

This paper introduces a gene expression transfer learning model that enables cross-species gene mapping using reactome profiles, improving functional gene understanding and drug response prediction.

bioRxiv · Apr 1, 2024 · PreprintSystems Biology

BIOFORMERS: A SCALABLE FRAMEWORK FOR EXPLORING BIOSTATES USING TRANSFORMERS

Siham Amara-Belgadi, Orion Li, David Yu Zhang, Ashwin Gopinath

The paper introduces BIOFORMERS, a transformer-based framework for analyzing biological systems, demonstrating its ability to capture biological insights from single-cell transcriptomics data.

bioRxiv · Nov 29, 2023 · PreprintBioinformatics