Author

Sina Ghadermarzi

Yale University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:large language model· 1 Assay:scRNA-seq· 1 Research Focus:software / tool· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Amin KarbasiiD· 1 shared Anna Zhong· 1 shared Antonio Henrique de Oliveira Fonseca· 1 shared Daniel M. LevineiD· 1 shared Daphne Raskin· 1 shared David van DijkiD· 1 shared David Zhang· 1 shared Insu HaniD· 1 shared

Activity by Year

2023-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Amin KarbasiORCID

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1 paper

Recent·Most cited

Cell2Sentence: Teaching Large Language Models the Language of Biology

Daniel M. Levine, Syed Asad Rizvi, Sacha Lévy, Nazreen Pallikkavaliyaveetil, David Zhang, Xingyu Chen, Sina Ghadermarzi, Ruiming Wu, Zihe Zheng, Ivan Vrkic, Anna Zhong, Daphne Raskin, Insu Han, Antonio Henrique de Oliveira Fonseca, Josue Ortega Caro, , David van Dijk

Cell2Sentence converts single-cell gene expression profiles into text-like cell sentences so standard large language models like GPT-2 can be fine-tuned for cell generation and cell-type annotation.

bioRxiv · Sep 11, 2023 · PreprintBioinformatics