Syed Asad Rizvi

Ecosystem disservices are underrepresented in literature on annual crop agroecosystems

The paper identifies a systematic underrepresentation of ecosystem disservices in literature on annual crop agroecosystems, highlighting biases in how agroecosystem functioning is understood.

CpG Atlas: A centralized multi-layer database and AI interface for DNA methylation research

CpG Atlas integrates over 1.2 million CpG sites across multiple methylation arrays with 18 annotation layers and provides a query interface for epigenetic research.

Scaling Large Language Models for Next-Generation Single-Cell Analysis

This paper scales large language models for single-cell analysis, improving predictive and generative capabilities and enabling biological discovery through virtual screening.

BrainLM: A foundation model for brain activity recordings

A masked-prediction model pretrained on 6,700 hours of fMRI that fine-tunes to predict clinical variables, forecasts future brain states, and recovers functional networks without supervision.

Cell2Sentence: Teaching Large Language Models the Language of Biology

Cell2Sentence converts single-cell gene expression profiles into text-like cell sentences so standard large language models like GPT-2 can be fine-tuned for cell generation and cell-type annotation.