Author

Sonya Kaur Kalsi

Cambridge Consultants (United Kingdom)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Assay:protein sequence· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Anna Schooneveld· 1 shared David Berman· 1 shared Kotryna Bloznelyte· 1 shared Navot Arad· 1 shared Sam Genway· 1 shared Shafiat Dewan· 1 shared Will Addison· 1 shared

Activity by Year

2025-2025 · peak 1/yr

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7 top collaborators · 21 mutual co-author links

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1 shared paperSystems Biology

Anna Schooneveld

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1 paper

Recent·Most cited

An Improved Systematic Method for Constructing ecGEMs using a Protein-Chemical Transformer

Anna Schooneveld, Shafiat Dewan, Navot Arad, Sam Genway, Sonya Kaur Kalsi, Kotryna Bloznelyte, Will Addison, David Berman

The paper introduces a transformer-based method to predict kcat values for E. coli enzymes, improving ecGEMs with fewer calibrations and better performance than existing models.

bioRxiv · Oct 29, 2025 · PreprintSystems Biology