Author

Kotryna Bloznelyte

Cambridge Consultants (United Kingdom)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:drug response / drug discovery· 2 Assay:protein sequence· 2 Approach:deep learning· 1 Organism:E. coli· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:machine learning (classical)· 1 Research Focus:perturbation response prediction· 1

Frequent Co-Authors

Anna Schooneveld· 2 shared David Berman· 2 shared Shafiat Dewan· 2 shared Will Addison· 2 shared Akash Kumar GuptaiD· 1 shared Andrew E. FirthiD· 1 shared Ben F. LuisiiD· 1 shared Ece Ibrahimi· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersSystems Biology

Anna Schooneveld

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3 papers

Recent·Most cited

An Improved Systematic Method for Constructing ecGEMs using a Protein-Chemical Transformer

Anna Schooneveld, Shafiat Dewan, Navot Arad, Sam Genway, Sonya Kaur Kalsi, Kotryna Bloznelyte, Will Addison, David Berman

The paper introduces a transformer-based method to predict kcat values for E. coli enzymes, improving ecGEMs with fewer calibrations and better performance than existing models.

bioRxiv · Oct 29, 2025 · PreprintSystems Biology

Protein Language Models in Directed Evolution

Russell G. Maguire, Kotryna Bloznelyte, Fikayo Adepoju, Matthew Armean-Jones, Shafiat Dewan, Stella Fozzard, Sophie E. Goddard, Akash Kumar Gupta, Ece Ibrahimi, Frances Patricia Jones, Preet Lalli, Anna Schooneveld, Sean Thompson, David Berman, Will Addison, , Ian Taylor

This paper demonstrates how protein language models can guide directed evolution to improve PET degradation enzyme variants.

bioRxiv · Aug 20, 2024 · PreprintBioinformatics

The stem loop 2 motif is a site of vulnerability for SARS-CoV-2

Valeria Lulla, Michal P. Wandel, Katarzyna Justyna Bandyra, Rachel Ulferts, Mary Wu, Tom Dendooven, Xiaofei Yang, Nicole Doyle, Stephanie Oerum, Rupert C. L. Beale, Sara M. O’Rourke, Felix Randow, Helena Jane Maier, William Scott, Yiliang Ding, , Ben F. Luisi

The paper identifies the stem loop 2 motif as a vulnerable site in SARS-CoV-2 that can be targeted by antisense oligonucleotides to inhibit replication and infection.

Journal of Virology · May 6, 2021Peer-reviewedMolecular Biology