Author

Steven L Salzberg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Florian P Breitwieser· 2 shared Alyssa C Frazee· 1 shared Andrew E Jaffe· 1 shared Ben LangmeadiD· 1 shared Daehwan Kim· 1 shared Geo Pertea· 1 shared Jeffrey T Leek· 1 shared Jennifer Lu· 1 shared

Activity by Year

2015-2016 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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2 shared papersBioinformatics

Florian P Breitwieser

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3 papers

Recent·Most cited

Centrifuge: rapid and sensitive classification of metagenomic sequences

Daehwan Kim, Li Song, Florian P Breitwieser, Steven L Salzberg

Centrifuge rapidly and accurately classifies metagenomic sequences using a space-efficient indexing scheme, enabling efficient analysis of large datasets on desktop computers.

bioRxiv · May 25, 2016Bioinformatics

Bracken: Estimating species abundance in metagenomics data

Jennifer Lu, Florian P Breitwieser, Peter Thielen, Steven L Salzberg

Bracken estimates species abundance in metagenomics data using Kraken taxonomy labels to improve accuracy beyond classification alone.

bioRxiv · May 5, 2016Bioinformatics

Flexible analysis of transcriptome assemblies with Ballgown

Alyssa C Frazee, Geo Pertea, Andrew E Jaffe, Ben Langmead, Steven L Salzberg, Jeffrey T Leek

The paper introduces Ballgown, a tool for analyzing transcriptome assemblies from RNA-seq data, focusing on gene structure reconstruction and expression analysis.

Nature Biotechnology · Mar 6, 2015Peer-reviewedBioinformatics