Author

Syed Shakeel Ahmed

University of Hong Kong

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Approach:deep learning· 1 Assay:long-read sequencing· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Ruibang LuoiD· 2 shared Tak‐Wah LamiD· 2 shared Amy Wing-Sze LeungiD· 1 shared Junhao SuiD· 1 shared Yekai ZhouiD· 1 shared Zhenxian ZhengiD· 1 shared

Activity by Year

2022-2022 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 11 mutual co-author links

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2 shared papersBioinformatics

Ruibang LuoORCID

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2 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedNov 7, 2022

Duet: SNP-Assisted Structural Variant Calling and Phasing Using Oxford Nanopore Sequencing

Yekai Zhou, Amy Wing-Sze Leung, Syed Shakeel Ahmed…·Ruibang Luo

Duet improves structural variant calling and phasing using low-coverage Oxford Nanopore sequencing data, outperforming existing tools at 8X coverage and maintaining strong performance at higher coverage.

15 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsBriefings in BioinformaticsPeer-reviewedJul 17, 2022

Clair3-Trio: high-performance Nanopore long-read variant calling in family trios with Trio-to-Trio deep neural networks

Junhao Su, Zhenxian Zheng, Syed Shakeel Ahmed…·Ruibang Luo

Clair3-Trio improves variant calling in family trios using Nanopore long-reads with a Trio-to-Trio neural network and a novel loss function.

36 citations

whole-genome sequencinglong-read sequencing

𝕏 PostBluesky