Author

T. J. Buida

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3

Signature Assays, Organisms & Methods

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Research Focus:phylogenetics / evolution· 3 Approach:deep learning· 2 Approach:statistical model· 2 Approach:experimental assay· 1 Organism:multiple species· 1 Assay:protein sequence· 1 Assay:proteomics· 1

Frequent Co-Authors

A. Rokas· 3 shared J. L. Steenwyk· 3 shared X.-X. Shen· 3 shared Y. Li· 3 shared A. L. LaBella· 1 shared D. Goltz· 1 shared

Activity by Year

2020-2021 · peak 2/yr

Co-Author Collaboration Network

6 top collaborators · 14 mutual co-author links

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3 shared papersEvolutionary Biology

A. Rokas

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3 papers

Recent·Most cited

OrthoSNAP: a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees

J. L. Steenwyk, D. Goltz, T. J. Buida, Y. Li, X.-X. Shen, A. Rokas

OrthoSNAP identifies single-copy orthologs from gene family trees, increasing the number of markers for molecular evolution studies by splitting and pruning gene families.

bioRxiv · Oct 30, 2021Evolutionary Biology

PhyKIT: a UNIX shell toolkit for processing and analyzing phylogenomic data

J. L. Steenwyk, T. J. Buida, A. L. LaBella, Y. Li, X.-X. Shen, A. Rokas

PhyKIT provides a UNIX shell toolkit for processing and analyzing phylogenomic data, offering functions to evaluate sequence alignments, trees, and evolutionary relationships.

bioRxiv · Oct 27, 2020Evolutionary Biology

ClipKIT: a multiple sequence alignment-trimming algorithm for accurate phylogenomic inference

J. L. Steenwyk, T. J. Buida, Y. Li, X.-X. Shen, A. Rokas

ClipKIT trims multiple sequence alignments to retain phylogenetically-informative sites, improving phylogenomic inference accuracy and efficiency.

bioRxiv · Jun 8, 2020Evolutionary Biology