Author

Tapas Bhattacharyya

University of North Dakota

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Developmental Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1

Frequent Co-Authors

Andrea Repele· 2 shared ManuiD· 2 shared Shawn Krueger· 2 shared Madison Naylor· 1 shared Michelle Y. TuineauiD· 1 shared Sunil K Nooti· 1 shared Trevor Long· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 18 mutual co-author links

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2 shared papersGenomics

Andrea Repele

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2 papers

Recent·Most cited

The contributions of DNA accessibility and transcription factor occupancy to enhancer activity during cellular differentiation

Trevor Long, Tapas Bhattacharyya, Andrea Repele, Madison Naylor, Sunil K Nooti, Shawn Krueger, Manu

This study investigates how DNA accessibility and transcription factor occupancy influence enhancer activity during macrophage-neutrophil differentiation, showing that TF binding, not total accessibility, drives enhancer upregulation.

G3 Genes Genomes Genetics · Nov 22, 2023Peer-reviewedGenomics

The regulatory control of Cebpa enhancers and silencers in the myeloid and red-blood cell lineages

Andrea Repele, Shawn Krueger, Tapas Bhattacharyya, Michelle Y. Tuineau, Manu

The paper experimentally tests thermodynamic models to decode the cis-regulatory logic of Cebpa enhancers and silencers in myeloid and red-blood cell lineages, revealing dominant repression mechanisms and redundant regulatory architectures.

PLoS ONE · Jun 10, 2019Peer-reviewedDevelopmental Biology