Author

Thomas G. Dunn

University of Pennsylvania

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Organism:human· 1 Research Focus:imputation· 1

Frequent Co-Authors

Ajinkya PattekariD· 1 shared Alexandra P. TurneriD· 1 shared Allison R. GreenplateiD· 1 shared Caroline A. G. Ittner· 1 shared Carolyn S. CalfeeiD· 1 shared Cynthia J. ClendeniniD· 1 shared Derek W. Russel· 1 shared Divij MathewiD· 1 shared

Activity by Year

2024-2024 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Ajinkya PattekarORCID

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1 paper

Recent·Most cited

Cytometry Masked Autoencoder: An Accurate and Interpretable Automated Immunophenotyper

Jaesik Kim, Matei Ionita, Matthew Lee, Michelle L. McKeague, Ajinkya Pattekar, Mark M. Painter, Joost Wagenaar, Van Truong, Dylan T. Norton, Divij Mathew, Yonghyun Nam, Sokratis A. Apostolidis, Cynthia J. Clendenin, Patryk Orzechowski, Sang‐Hyuk Jung, , Dokyoon Kim

The paper introduces cyMAE, a masked autoencoder for automated immunophenotyping, showing it improves accuracy and interpretability over manual methods in cytometry data analysis.

Cell Reports Medicine · Nov 1, 2024Peer-reviewedBioinformatics