Rapid-PFP: Accelerating Prefix-Free Parsing with GPU Parallelism
Eddie Ferro, Tyler Pencinger, Oded Green, Mahsa Lotfollahi, Christina A. Boucher
RAPID-PFP accelerates Prefix-Free Parsing using GPU parallelism, achieving significant speedups on genomic datasets compared to CPU implementations.
bioRxiv · May 1, 2026 · PreprintBioinformatics