spaDesign: A Statistical Framework to Improve the Design of Sequencing-based Spatial Transcriptomics Experiments
Juan Xie, Hyeongseon Jeon, Won Chang, Yeseul Jeon, Zihai Li, Qin Ma, Dongjun Chung
spaDesign provides a statistical framework to optimize sequencing depth in spatial transcriptomics experiments by simulating data and estimating required sequencing depth for detecting spatial domains.
bioRxiv · Sep 10, 2024 · PreprintBioinformatics