Author

Yui Nose

RIKEN

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Yasunori IchihashiiD· 3 shared Shuhei YabeiD· 2 shared Akifumi SugiyamaiD· 1 shared Akito KagaiD· 1 shared Arisa ShibataiD· 1 shared Chongyang YangiD· 1 shared Erika Usui· 1 shared Fitria NingsihiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersMicrobiology

Yasunori IchihashiORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Integration of Proxy Intermediate Omics traits into a Nonlinear Two-Step model for accurate phenotypic prediction

Hayato Yoshioka, Tristan Mary‐Huard, Julie Aubert, Yusuke Toda, Yoshihiro Ohmori, Yuji Yamasaki, Hisashi Tsujimoto, H. Takahashi, Mikio Nakazono, Hideki Takanashi, Toru Fujiwara, Mai Tsuda, Akito Kaga, Jun Inaba, Yushiro Fuji, , Hiroyoshi Iwata

The paper proposes a nonlinear two-step model integrating proxy intermediate omics traits to improve phenotypic prediction in soybean, showing better accuracy than linear models.

Theoretical and Applied Genetics · Mar 1, 2026Peer-reviewedBioinformatics

Chromid-like secondary replicons as key sites of biosynthetic gene clusters in Ktedonobacteria

Shuhei Yabe, Yu Zheng, Shunji Takahashi, Chongyang Yang, Yui Nose, Shinichi Yamazaki, Nao Okuma, MAZYTHA KINANTI RACHMANIA, Fitria Ningsih, Wellyzar Sjamsuridzal, Mayo Sato, Kiminori Toyooka, Yasunori Ichihashi

The paper identifies chromid-like secondary replicons in Ktedonobacteria as key genomic regions harboring biosynthetic gene clusters, expanding understanding of soil microbial secondary metabolism.

bioRxiv · Feb 3, 2026 · PreprintMicrobiology

Horizontal acquisition of nicotine catabolism gene cluster drives the assembly of tobacco root microbiota community

Tomohisa Shimasaki, Yui Nose, Sachiko Masuda, Arisa Shibata, Tsubasa Shoji, Shuhei Yabe, Maiko Furubayashi, Yoshitomo Kikuchi, Ken Shirasu, Kazufumi Yazaki, Yasunori Ichihashi, Akifumi Sugiyama, Ryohei Thomas Nakano

This study shows that horizontal gene transfer of nicotine catabolism genes in Arthrobacter enables its colonization of tobacco roots, shaping the root microbiota community.

bioRxiv · Dec 25, 2025 · PreprintMicrobiology