Author

Shuhei Yabe

RIKENORCID 0000-0002-8581-987XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

Yasunori IchihashiiD· 2 shared Yui Nose· 2 shared Akifumi SugiyamaiD· 1 shared Arisa ShibataiD· 1 shared Chongyang YangiD· 1 shared Fitria NingsihiD· 1 shared Kazufumi YazakiiD· 1 shared Ken ShirasuiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersMicrobiology

Yasunori IchihashiORCID

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2 papers

Recent·Most cited

Chromid-like secondary replicons as key sites of biosynthetic gene clusters in Ktedonobacteria

Shuhei Yabe, Yu Zheng, Shunji Takahashi, Chongyang Yang, Yui Nose, Shinichi Yamazaki, Nao Okuma, MAZYTHA KINANTI RACHMANIA, Fitria Ningsih, Wellyzar Sjamsuridzal, Mayo Sato, Kiminori Toyooka, Yasunori Ichihashi

The paper identifies chromid-like secondary replicons in Ktedonobacteria as key genomic regions harboring biosynthetic gene clusters, expanding understanding of soil microbial secondary metabolism.

bioRxiv · Feb 3, 2026 · PreprintMicrobiology

Horizontal acquisition of nicotine catabolism gene cluster drives the assembly of tobacco root microbiota community

Tomohisa Shimasaki, Yui Nose, Sachiko Masuda, Arisa Shibata, Tsubasa Shoji, Shuhei Yabe, Maiko Furubayashi, Yoshitomo Kikuchi, Ken Shirasu, Kazufumi Yazaki, Yasunori Ichihashi, Akifumi Sugiyama, Ryohei Thomas Nakano

This study shows that horizontal gene transfer of nicotine catabolism genes in Arthrobacter enables its colonization of tobacco roots, shaping the root microbiota community.

bioRxiv · Dec 25, 2025 · PreprintMicrobiology