Author

Yunhao Qiao

Shanghai Jiao Tong University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:scRNA-seq· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Organism:mouse· 1

Frequent Co-Authors

Hongyi XiniD· 2 shared Jinpu CaiiD· 2 shared Benjamin D. SimonsiD· 1 shared Cheng Wang· 1 shared Guanbin LiiD· 1 shared Haoyang LiuiD· 1 shared Hong-Bin SheniD· 1 shared Hui ChengiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Hongyi XinORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Information Geometry Reconciles Discrete and Continuous Variation in Single-Cell and Spatial Transcriptomic Analysis

Jinpu Cai, Yuxuan Wang, Yunhao Qiao, Cheng Wang, Ziqi Rong, 禄庭周, Haoyang Liu, Meng Jiang, Hong-Bin Shen, Jingyi Jessica Li, Hongyi Xin

GAIA provides a framework for analyzing single-cell and spatial transcriptomic data by reconciling discrete and continuous gene expression variation through information geometry.

bioRxiv · Apr 23, 2026 · PreprintBioinformatics

VeloTrace Reconciles Divergent Velocity and Trajectory in Single-cell Transcriptomics with Deep Neural ODE

Hui Cheng, Yunhao Qiao, Yufan Feng, Yuyang Wei, Jiachen Li, Jinpu Cai, Shuangjia Zheng, Siheng Chen, Guanbin Li, Benjamin D. Simons, Qiuyu Lian, Hongyi Xin

VeloTrace unifies RNA velocity and trajectory inference using NeuralODEs, improving accuracy and coherence in single-cell transcriptomic analysis.

bioRxiv · Apr 13, 2026 · PreprintBioinformatics