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AIRI - Artificial Intelligence Research InstituteORCID 0000-0001-5001-146XUnclaimed ORCID profile · follow to get notified of new preprints
3 papers
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П. В. Страшнов, Andrey Shevtsov, Viacheslav Meshchaninov…·Dmitry Vetrov
This paper systematically evaluates metrics for protein generative models, identifying challenges and offering recommendations for robust evaluation.
Dmitriy Umerenkov, Tatiana Shashkova, П. В. Страшнов…·Olga L. Kardymon
PROSTATA predicts protein stability changes from point mutations using a transformer-based model, outperforming existing neural network approaches.
Tatiana Shashkova, Dmitriy Umerenkov, Mikhail Salnikov…·Nikita V. Ivanisenko
SEMA predicts conformational B-cell epitopes using transfer learning on antigen sequences and structures, achieving ROC AUC of 0.76 on an independent test set.