Author

Shilpita Karmakar

The Jackson Laboratory for Genomic MedicineORCID 0000-0001-5042-2306Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

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Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Assay:long-read sequencing· 1 Approach:machine learning (classical)· 1 Approach:statistical model· 1

Frequent Co-Authors

Christina ChatzipantsiouiD· 1 shared Emma Wade· 1 shared Hash Brown TahaiD· 1 shared Lasya Karuturi· 1 shared Qiuyang ZhangiD· 1 shared Sheng LiiD· 1 shared Thatcher Slocum· 1 shared Yang LiuiD· 1 shared

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2025-2025 · peak 1/yr

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10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Christina ChatzipantsiouORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintJun 29, 2025

NANOME: A Nextflow pipeline for haplotype-aware allele-specific consensus DNA methylation detection by nanopore long-read sequencing

Yang Liu, Hash Brown Taha, Qiuyang Zhang…·Sheng Li

NANOME improves DNA methylation detection using nanopore long-read sequencing by integrating multiple tools and enhancing precision and accuracy in human cell lines.

2 citations

humanlong-read sequencing

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