Author

Nicholas Y. Zhang

Georgia Institute of TechnologyORCID 0000-0001-5078-4403Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Ahmet F. CoskuniD· 2 shared Adam J. FordiD· 1 shared Anurendra KumariD· 1 shared Athanasios MantalarisiD· 1 shared Bhavay AggarwaliD· 1 shared Felix Rivera· 1 shared Saurabh SinhaiD· 1 shared Thomas HuiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 20 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Ahmet F. CoskunORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 3, 2026

CellWHISPER disentangles direct cell-cell communication from structural proximity

Anurendra Kumar, Felix Rivera, Bhavay Aggarwal…·Saurabh Sinha

CellWHISPER infers direct cell-cell communication from spatial transcriptomics data, reducing errors by accounting for cell-type-specific expression and spatial organization.

2 citations

mousehuman

𝕏 PostBluesky

Systems BiologyCell Reports MethodsPeer-reviewedMay 1, 2023

Subcellular spatially resolved gene neighborhood networks in single cells

Zhou Fang, Adam J. Ford, Thomas Hu…·Ahmet F. Coskun

The paper introduces spaGNN, a method to analyze subcellular spatial gene neighborhoods in MSCs and chondrocytes, revealing tissue-specific transcriptional and spatial features.

16 citations

humanscRNA-seq

𝕏 PostBluesky