Author

Muzaffer Arıkan

Istanbul UniversityORCID 0000-0001-5162-2000Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 5 Approach:statistical model· 3 Research Focus:database / resource· 2 Organism:human· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1

Frequent Co-Authors

Adil MardinoğluiD· 1 shared Ahmet Arıhan ErözdeniD· 1 shared Aybala Neslihan AlagöziD· 1 shared Aysu ŞeniD· 1 shared David L. MoyesiD· 1 shared Fernando García-GuevaraiD· 1 shared Frederick ClaseniD· 1 shared Gamze DemireliD· 1 shared

Activity by Year

2024-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperMicrobiology

Adil MardinoğluORCID

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

PLATE: a global atlas of food metaplasmidomes

Mehmet Umur Aslan, Rıza Arda Kayacan, Süleyman Arif Söğütdelen, Özlem Sağıroğlu, Muzaffer Arıkan

PLATE provides a global resource of food metaplasmidomes, offering curated catalogs and annotations for studying plasmid diversity and function in food ecosystems.

bioRxiv · Nov 4, 2026 · PreprintBioinformatics

MetaPepticon: automated prediction of anticancer peptides from microbial genomes and metagenomes

Ahmet Arıhan Erözden, Nalan Tavşanlı, Gamze Demirel, Nazmiye Özlem Şanlı, Mahmut Çalışkan, Muzaffer Arıkan

MetaPepticon automates the discovery of anticancer peptides from microbial genomes and metagenomes, identifying 79,587 novel candidates including 13,149 high-confidence, non-toxic peptides.

PeerJ · Mar 27, 2026Peer-reviewedBioinformatics

Microbiome signatures of virulence in the oral-gut-brain axis influence Parkinson's disease and cognitive decline pathophysiology

Frederick Clasen, Süleyman Yıldırım, Muzaffer Arıkan, Fernando García-Guevara, Lűtfű Hanoğlu, Nesrin Helvacı Yılmaz, Aysu Şen, Handan Kaya Celik, Aybala Neslihan Alagöz, Tuğçe Kahraman Demir, Zeynep Temel, Adil Mardinoğlu, David L. Moyes, Mathias Uhlén, Saeed Shoaie

This study investigates microbiome signatures in the oral-gut-brain axis and their role in Parkinson's disease and cognitive decline.

Gut Microbes · May 27, 2025Peer-reviewedMicrobiology

Gut Microbiota Alterations Across REM Sleep Behavior Disorder and Parkinson's Disease: A Machine Learning-Based Meta-Analysis

Muzaffer Arıkan

This study uses machine learning to analyze gut microbiota data from Parkinson's disease, RBD, and healthy controls, finding weak to moderate accuracy in distinguishing disease groups but not between PD and RBD.

bioRxiv · Apr 9, 2025 · PreprintMicrobiology

gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes

Muzaffer Arıkan, Thilo Muth

gNOMO2 is an updated pipeline for analyzing microbiome multi-omics data, offering enhanced features for integration and visualization across various omics types.

GigaScience · Jan 1, 2024Peer-reviewedBioinformatics