Author

David Vadnais

University of Colorado Colorado SpringsORCID 0000-0001-5250-5375Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:dimensionality reduction· 1 Research Focus:gene regulatory network inference· 1 Assay:Hi-C· 1 Approach:optimal transport· 1 Research Focus:trajectory inference· 1

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Michael Middleton· 1 shared Oluwatosin OluwadareiD· 1 shared

Activity by Year

2022-2022 · peak 1/yr

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2 top collaborators · 1 mutual co-author link

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1 shared paperBioinformatics

Michael Middleton

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1 paper

Recent·Most cited

BioinformaticsBioData MiningPeer-reviewedSep 21, 2022

ParticleChromo3D: A Particle Swarm Optimization Algorithm for Chromosome and Genome 3D Structure Prediction from Hi-C Data

David Vadnais, Michael Middleton, Oluwatosin Oluwadare

ParticleChromo3D uses particle swarm optimization to reconstruct 3D chromosome and genome structures from Hi-C data, showing higher accuracy than existing methods.

4 citations

Hi-Coptimal transport

𝕏 PostBluesky