Author

Alexis-Walid Ahmed

Goethe University FrankfurtORCID 0000-0001-5338-6566Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Organism:multiple species· 1 Organism:plant (other)· 1

Frequent Co-Authors

Danielle L. LevesqueiD· 2 shared Dimitrios ‐ Georgios KontopoulosiD· 2 shared Michael HilleriD· 2 shared Abigail LindiD· 1 shared Aitor Serres· 1 shared Allyson G. HindleiD· 1 shared Alyssa J. LawleriD· 1 shared Amanda M. KowalczykiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersEvolutionary Biology

Danielle L. LevesqueORCID

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2 papers

Recent·Most cited

Evolutionary BiologyGenome Biology and EvolutionPeer-reviewedSep 1, 2026

Lack of evidence for gene-level convergence linked to evolutionary shifts in torpor among placental mammals

Dimitrios ‐ Georgios Kontopoulos, Alexis-Walid Ahmed, Bernhard Bein…·Michael Hiller

The paper examines gene-level convergence in placental mammals during evolutionary shifts in torpor and finds that individual genes have low explanatory power, while pathway-level convergence is slightly stronger.

DOI 10.1093/gbe/evag216

plant (other)whole-genome sequencing

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GenomicsSciencePeer-reviewedApr 27, 2023

Integrating gene annotation with orthology inference at scale

Bogdan Kirilenko, Chetan Munegowda, Ekaterina Osipova…·Patrick F. Sullivan

TOGA integrates gene annotation and orthology inference across hundreds of genomes, improving ortholog detection and creating large comparative gene resources.

209 citationstop 1%

multiple specieswhole-genome sequencing

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