Author

Amy E. McCart Reed

The University of QueenslandORCID 0000-0001-5387-2791Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Organism:human· 2 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:spatial transcriptomics· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Peter T. SimpsoniD· 2 shared Amanda B. SpurdleiD· 1 shared Anita Rohini SkandarajahiD· 1 shared Chenhao ZhouiD· 1 shared Cristina FortuñoiD· 1 shared Dilanka L De SilvaiD· 1 shared Fred RoostaiD· 1 shared Geoffrey John LindemaniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Peter T. SimpsonORCID

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2 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedJan 16, 2026

STimage: Robust, confident and interpretable models for predicting gene markers from cancer histopathological images

Xiao Tan, Onkar Mulay, Jacky Xie…·Quan Hoang Nguyen

STimage predicts gene expression and classifies cell types from histopathological images, improving robustness and interpretability for cancer and disease analysis.

19 citationstop 1%

humanspatial transcriptomics

𝕏 PostBluesky

Genetic & Genomic MedicinemedRxivPreprintJun 12, 2025

Integrating breast tumor homologous recombination deficiency status to aid germline BRCA1 and BRCA2 variant classification

Cristina Fortuño, Jia Zhang, Lambros T. Koufariotis…·Nicola Waddell

This paper integrates tumor homologous recombination deficiency status with germline BRCA1 and BRCA2 variant classification to improve pathogenicity prediction.

DOI 10.1101/2025.06.12.25329237

humanwhole-genome sequencing

𝕏 PostBluesky