Author

Alexey Zabelkin

ITMO UniversityORCID 0000-0001-5433-0150Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 3 Assay:whole-genome sequencing· 3 Organism:human· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Nikita AlexeeviD· 2 shared Olga BochkarevaiD· 2 shared Yulia YakovlevaiD· 2 shared Angela L MilleriD· 1 shared Bert van der ZwaagiD· 1 shared Danielle Sewell· 1 shared Danny E. MilleriD· 1 shared Dr. Rachel Martin· 1 shared

Activity by Year

2021-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Nikita AlexeevORCID

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3 papers

Recent·Most cited

Genetic & Genomic MedicinemedRxivPreprintOct 20, 2026

Accurate repeat expansion genotyping from whole-genome and real-time targeted nanopore sequencing with Mahi-mahi

Sophia B Gibson, Rebecca N Palmer, Sebastian Hollizeck…·Philipp Rescheneder

Mahi-mahi accurately genotypes repeat expansions from nanopore sequencing data, matching orthogonal methods and identifying pathogenic alleles.

DOI 10.64898/2026.10.16.26365781

humanwhole-genome sequencing

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BioinformaticsBioinformaticsPeer-reviewedSep 30, 2021

PaReBrick: PArallel REarrangements and BReakpoints identification toolkit

Alexey Zabelkin, Yulia Yakovleva, Olga Bochkareva, Nikita Alexeev

PaReBrick identifies parallel rearrangements in bacterial genomes by analyzing synteny blocks and phylogenetic trees to detect events contributing to pathogenicity and adaptation.

10 citations

bacteria (other)whole-genome sequencing

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BioinformaticsFrontiers in MicrobiologyPeer-reviewedApr 12, 2021

High rates of genome rearrangements and pathogenicity of Shigella spp.

Zaira Seferbekova, Alexey Zabelkin, Yulia Yakovleva…·Olga Bochkareva

This study analyzes genome rearrangements in Shigella and E. coli strains, finding high rearrangement rates and specific E3 ubiquitin ligases linked to pathogenicity.

29 citations

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