Author

Kalyani Sonawane

Medical University of South CarolinaORCID 0000-0001-5501-3034Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Organism:human· 2 Approach:Bayesian inference· 1 Assay:bulk RNA-seq· 1 Research Focus:gene regulatory network inference· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1

Frequent Co-Authors

Brian NeeloniD· 2 shared Chloe MattilaiD· 2 shared Peggi M. AngeliD· 2 shared Sha CaoiD· 2 shared Souvik SealiD· 2 shared Anirban ChakrabortyiD· 1 shared Dongjun ChungiD· 1 shared Elizabeth Goodwin HilliD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

9 top collaborators · 33 mutual co-author links

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2 shared papersBioinformatics

Brian NeelonORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 21, 2026

FusedFCR: A Fused Forward Continuation-Ratio model for marker selection along cell-fate trajectories

Chloe Mattila, Anirban Chakraborty, Peggi M. Angel…·Souvik Seal

FusedFCR identifies marker genes associated with developmental transitions in time-course scRNA-seq data by combining lasso and fusion penalties for interpretable gene selection.

DOI 10.64898/2026.07.20.739649

mousehuman

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BioinformaticsbioRxivPreprintOct 24, 2025

GRASS-NB: Group-structured variable selection for spatial negative binomial data with applications to cancer registry and spatial omics

Chloe Mattila, Brian Neelon, Kalyani Sonawane…·Souvik Seal

The paper introduces a Bayesian negative binomial regression model with group-structured priors for spatially correlated count data, applied to cancer registry and spatial omics datasets.

DOI 10.1101/2025.10.24.684446

humanbulk RNA-seq

𝕏 PostBluesky