Author

Jonathan G. Hedley

University of OxfordORCID 0000-0001-5513-4098Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:DNA methylation· 1 Assay:Hi-C· 1

Frequent Co-Authors

Alexei A. KornysheviD· 1 shared Andrew StannardiD· 1 shared Angelo RosaiD· 1 shared AnonymousiD· 1 shared Gleb OshaniniD· 1 shared Kaspar MärtensiD· 1 shared Natalia E. SimonowicziD· 1 shared Philip H. S. TorriD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperBiophysics

Alexei A. KornyshevORCID

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2 papers

Recent·Most cited

BiophysicsPRX LifePeer-reviewedJul 14, 2026

Recognition in Confinement: The Dynamics of Homologous Gene Pairing

Anonymous, Jonathan G. Hedley, Natalia E. Simonowicz…·Alexei A. Kornyshev

This study extends Helical Coherence Theory to model homologous DNA pairing under confinement, showing that optimal confinement accelerates pairing while avoiding tangling and metastable states.

DOI 10.1103/n5cv-svz2

DNA methylationHi-C

𝕏 PostBluesky

GenomicsbioRxivPreprintApr 20, 2026

GenePT Revisited: Do Better Text Embeddings Make Better Gene Embeddings?

Jonathan G. Hedley, Philip H. S. Torr, Kaspar Märtens

The paper evaluates improved text embeddings for gene representations, showing consistent performance gains across multiple tasks.

DOI 10.64898/2026.04.16.718976

statistical modelbenchmarking

𝕏 PostBluesky