Sanjana Tule

The paper introduces a framework using MSA-Transformer to generate hybrid proteins between specified source and target proteins, producing sequences with higher consistency and plausibility than random baselines.

DNACipher predicts variant effects across cell types and assays, identifying imVars at most GWAS loci with support from experimental data.

This study evaluates protein language models' ability to infer phylogenetic relationships without explicit training, finding they perform well in low- and high-gap settings and capture broader evolutionary relationships.

This paper introduces a Mixed-Integer Programming approach to optimally reconstruct indel events in phylogenetic trees, outperforming existing methods in accuracy and efficiency.