Author

Xuening He

Broad InstituteORCID 0000-0001-5787-5076Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:simulation· 1 Approach:statistical model· 1

Frequent Co-Authors

Christian VaagensøiD· 1 shared Dewei HuiD· 1 shared Hjörleifur EinarssoniD· 1 shared Kasper LageiD· 1 shared Petra PáleníkováiD· 1 shared Robert KrautziD· 1 shared Robin AnderssoniD· 1 shared Ruining CuiiD· 1 shared

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2025-2025 · peak 1/yr

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9 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Christian VaagensøORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintJun 19, 2025

Genome-wide rules of transcription factor cooperativity revealed through in silico binding site ablation

Xuening He, Hjörleifur Einarsson, Petra Páleníková…·Robin Andersson

The paper introduces DeepCompARE, an in silico ablation framework to analyze TF cooperativity, finding most TF motifs are independent with defined synergy and redundancy effects.

DOI 10.1101/2025.06.19.660093

DNA methylationChIP-seq

𝕏 PostBluesky