AliMarko identifies eukaryotic viruses in metagenomic data using reference mapping, de novo assembly, and HMM, with tools to reduce false positives and visualize results.

bioRxiv · Jul 19, 2024 · PreprintBioinformatics

Identification and genetic characterization of MERS-related coronavirus isolated from Nathusius' pipistrelle (Pipistrellus nathusii) near Zvenigorod (Moscow region, Russia)

Anna S. Speranskaya, I.V. Artyushin, Andrei E. Samoilov, Elena V. Korneenko, K. V. Khabudaev, Elena Nikolaevna Ilina, Alexander P. Yuzefovich, Marina V. Safonova, Anna Sergeevna Dolgova, Anna S. Gladkikh, Vladimir G. Dedkov, Peter Daszak

The paper identifies and genetically characterizes a novel MERS-related coronavirus from bats, suggesting potential for hedgehogs to act as intermediate hosts.

International Journal of Environmental Research and Public Health · Feb 19, 2023Peer-reviewedGenomics

SCV-2000bp: a primer panel for SARS-CoV-2 full-genome sequencing

Anna S. Speranskaya, V.V. Kaptelova, Валдохина Анна Владимировна, Victoria P. Bulanenko, Andrei E. Samoilov, Elena V. Korneenko, Olga Yu. Shipulina, В. Г. Акимкин

The paper describes a primer panel for amplifying the full SARS-CoV-2 genome using 17 primer pairs and demonstrates its effectiveness with clinical samples.

bioRxiv · Aug 4, 2020 · PreprintMolecular Biology