Author

Maria Boulougouri

École Polytechnique Fédérale de LausanneORCID 0000-0001-5969-3292Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Organism:human· 1 Approach:statistical model· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Pierre VandergheynstiD· 1 shared Vamsi NallapareddyiD· 1 shared

Activity by Year

2026-2026 · peak 1/yr

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2 top collaborators · 1 mutual co-author link

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1 shared paperBioinformatics

Pierre VandergheynstORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintMar 23, 2026

Learning gene interactions from tabular gene expression data using Graph Neural Networks

Maria Boulougouri, Vamsi Nallapareddy, Pierre Vandergheynst

This paper introduces REGEN, a GNN framework for learning gene interaction networks from bulk transcriptomic data and predicting patient outcomes, showing improved performance across cancer types.

DOI 10.64898/2026.03.19.712949

humanbulk RNA-seq

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